FastQCFastQC Report
Wed 8 May 2024
EGAF00007962940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476684
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15710.32956843527368235No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13540.284045615124485No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12590.26411626989787784No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6230.13069454817027634No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6040.1267086791249549No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4980.10447172550368798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)