FastQCFastQC Report
Wed 8 May 2024
EGAF00007962941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476684
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34450.7227009926911748No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23720.49760428292118053No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12270.25740322729523124No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6330.13279237398360338No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6220.13048476558894362No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5030.10552063841035152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)