FastQCFastQC Report
Wed 8 May 2024
EGAF00007962942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490683
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15720.3203697702997659No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14130.2879659576549422No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13500.2751267111352951No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6590.1343025945467848No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6400.13043044083451025No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5110.1041405551038043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)