FastQCFastQC Report
Wed 8 May 2024
EGAF00007962943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490683
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36240.7385623712254143No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13650.27818367459235394No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7000.1426582946627456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6650.1355253799296083No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5550.11310764791117686No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5370.10943929176270627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)