FastQCFastQC Report
Wed 8 May 2024
EGAF00007962944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480275
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15600.3248139086981417No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13870.2887928790796939No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13670.2846285981989485No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6360.13242413200770392No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5940.12367914215813856No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5210.10847951694341784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)