FastQCFastQC Report
Wed 8 May 2024
EGAF00007962945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480275
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34960.727916297954297No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22690.47243766592056635No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13510.2812971734943522No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6290.13096663369944303No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6160.1282598511269585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5410.11264379782416323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)