FastQCFastQC Report
Wed 8 May 2024
EGAF00007962947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521810
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13170.25239071692761733No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8150.15618711791648301No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6470.12399149115578467No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6250.11977539717521703No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5270.10099461489814301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)