FastQCFastQC Report
Wed 8 May 2024
EGAF00007962948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504264
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6040.11977852870718514No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5950.11799374930591912No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5800.11501911697047579No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5480.10867323465486332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)