FastQCFastQC Report
Wed 8 May 2024
EGAF00007962952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484435
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13250.2735145065901514No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC13190.2722759503338941No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12470.25741327525880664No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG11000.22706864698050305No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10480.21633449275960656No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10470.216128066716897No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9870.2037425041543241No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT8090.16699866855202453No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7280.1502781590925511No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG6900.14243396946958828No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6310.13025483294972492No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6150.12695201626637215No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5860.12096566102779527No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4930.10176803905580728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)