FastQCFastQC Report
Wed 8 May 2024
EGAF00007962953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484435
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17420.35959416640003306No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC13320.27495948888911825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12430.2565875710879685No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG11070.22851362927946992No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10950.2260365167669553No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10910.22521081259611714No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG10890.22479796051069803No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG9570.19754972287303768No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7750.1599801830998999No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7510.1550259580748707No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA6770.13975043091436415No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6620.13665404027372094No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6470.1335576496330777No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6170.12736486835179125No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5810.11993353081424753No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5190.10713511616625554No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC5130.10589655990999826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)