FastQCFastQC Report
Wed 8 May 2024
EGAF00007962954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468134
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC13040.2785527220838478No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12320.26317251043504636No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12220.2610363699282684No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10780.23027594663066558No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10690.2283534201745654No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10060.21489573498186418No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9200.19652492662357357No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT7800.16661895952868197No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7020.14995706357581376No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG6820.1456847825622578No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6470.13820829078853492No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6150.13137264116684538No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5560.11876941217685534No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4880.10424365673076513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)