FastQCFastQC Report
Wed 8 May 2024
EGAF00007962955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468134
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21630.46204719161607577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16490.3522495695676879No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC13130.28047524853994793No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12320.26317251043504636No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG11370.2428791756206556No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG10740.22942149042795437No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10330.2206633143501647No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9920.211905138272375No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG9510.2031469621945853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7600.162346678515126No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7130.15230681813326954No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6910.14760730901835797No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA6760.14440309825819103No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6200.1324407114202344No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5600.11962386837956654No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5000.10680702533889869No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4860.10381642862940953No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC4690.10018498976788698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)