FastQCFastQC Report
Wed 8 May 2024
EGAF00007962956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486497
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13640.280371718633414No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13260.27256077632544495No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC13040.26803865183135767No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG11440.23515047369254077No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT11070.22754508249793934No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9900.2034956022339295No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9860.2026733977804591No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT8540.17554065081593515No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7650.15724660172621827No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG6940.14265247267711825No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6900.14183026822364783No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6150.1264139347210774No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5790.11901409463984361No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5680.11675303239279997No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACG4900.10072004555012673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)