FastQCFastQC Report
Wed 8 May 2024
EGAF00007962957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486497
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18080.3716364129686308No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC13460.2766717985927971No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13200.27132746964523935No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG11530.2370004337128492No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG11340.2330949625588647No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11200.23021724697171822No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG10360.21295095344883935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10220.21007323786169288No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8820.1812960819902281No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7930.1630020329005112No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7180.14758569939794078No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA6960.14306357490385346No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6540.13443042814241402No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6050.12435842358740135No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5940.1220973613403577No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5390.1107920501051394No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC5240.10770878340462531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)