FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473112
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC13480.2849219635096975No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13130.2775241380476504No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12680.2680126481678757No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10370.2191870001183652No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10220.21601650349177362No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10220.21601650349177362No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9780.20671638005377163No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT8430.17818191041444734No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG7690.16254079372326216No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7640.16148396151439828No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7280.15387476961057847No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6940.14668831059030418No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5770.12195843690288981No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4850.10251272425979471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)