FastQCFastQC Report
Wed 8 May 2024
EGAF00007962959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473112
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21690.45845381220514386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16960.3584774852466224No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC13650.28851519301983464No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12460.26336258644887467No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11040.23334855171714097No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10700.22616209269686668No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG10590.2238370618373662No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG10440.22066656521077463No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG9960.21052097600568154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8000.1690931534182181No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA7480.15810209844603393No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7480.15810209844603393No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7340.1551429682612151No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6960.14711104347384973No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5970.12618576573834525No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5270.11139011481425118No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC5000.1056832208863863No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4820.1018786249344764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)