FastQCFastQC Report
Wed 8 May 2024
EGAF00007962961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences317734
Total Bases9.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9220.29017983596341596No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8290.26091006942914513No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8160.25681859668779544No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7850.24706200784303853No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6390.20111162167095747No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6330.19922324963648838No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5460.17184185513668668No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4680.14729301868858855No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4530.14257208860241588No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4430.1394248018783007No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4210.1325007710852474No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4170.13124185639560135No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4090.12872402701630925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3960.12463255427495956No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA3800.11959689551637534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT3690.11613488011984868No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG3640.1145612367577911No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3470.10921084932679537No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3440.10826666330956082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)