FastQCFastQC Report
Wed 8 May 2024
EGAF00007962965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322246
Total Bases9.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9600.2979090508493511No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9190.2851858518026601No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7930.24608528887868275No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7350.22808661705653444No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6480.201088609323312No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6470.20077828739534392No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5440.1688151288146323No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4970.1542299982001328No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4500.13964486758563333No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4470.1387139018017291No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4380.13592100445001645No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4360.1353003605940803No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4260.13219714131439955No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4160.12909392203471884No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3990.12381844925926155No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT3820.1185429764838043No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3560.11047460635663438No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3490.10830235286085786No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC3450.10706106514898556No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG3350.10395784586930482No Hit

[OK]Adapter Content

Adapter graph