FastQCFastQC Report
Wed 8 May 2024
EGAF00007962967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences312063
Total Bases9.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14360.46016349262809114No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9670.3098733268602814No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8600.275585378593425No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7800.24994952942194365No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7680.24610415204622144No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6300.20188231222541603No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6090.19515290181790215No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.16855570830249023No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4510.1445220997042264No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4450.14259941101636528No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4190.13426776003563382No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4140.13266551946241625No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT3840.12305207602311072No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA3830.1227316279084672No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG3810.12209073167918016No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT3610.11568176938630981No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3540.11343863258380518No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3510.11247728823987463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)