FastQCFastQC Report
Wed 8 May 2024
EGAF00007962968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542328
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17150.3162292929739936No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12640.2330692864834565No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11740.21647416323700786No Hit
ACCGTTGAAGCTCAGGGTAACCGGGACGGATTTGTGACCTTCGC8860.1633697688483722No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8840.16300098833178447No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC5780.10657756929385907No Hit
GGACGGAGTAATGTCCAGCACGTTAACGCGACCGAACTGTTCCG5680.10473366671092033No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5490.10123025180333674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)