FastQCFastQC Report
Wed 8 May 2024
EGAF00007962969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542328
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27390.5050449174669204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17830.32876783053797703No Hit
AAACACCCGACCGACGCTCAGGCACAGACCG9800.18070245312799632No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9090.1676107447891313No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6240.11505952117537727No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6170.11376878936732016No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5990.11044976471803042No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5880.1084214718767978No Hit
GCAGCAACCAAAACCACCCGCACCGCTGCTA5820.10731513032703455No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5730.1056556180023897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)