FastQCFastQC Report
Wed 8 May 2024
EGAF00007962970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521184
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16780.3219592312887579No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12740.2444434211334193No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11470.22007582734696385No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8700.16692761097808068No Hit
ACCGTTGAAGCTCAGGGTAACCGGGACGGATTTGTGACCTTCGC8250.15829342420335238No Hit
GGACGGAGTAATGTCCAGCACGTTAACGCGACCGAACTGTTCCG5740.11013384908209001No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC5740.11013384908209001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)