FastQCFastQC Report
Wed 8 May 2024
EGAF00007962971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521184
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26120.5011665745686744No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25820.49541045005218887No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16870.32368606864370353No Hit
AAACACCCGACCGACGCTCAGGCACAGACCG9130.1751780561183766No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8940.17153251059126912No Hit
GCAGCAACCAAAACCACCCGCACCGCTGCTA5770.11070946153373858No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5770.11070946153373858No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5540.10629643273776632No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5510.10572082028611775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)