FastQCFastQC Report
Wed 8 May 2024
EGAF00007962972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545991
Total Bases24 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17920.3282105382689458No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13300.2435937588714832No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11860.2172196977605858No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9080.16630310756038102No Hit
ACCGTTGAAGCTCAGGGTAACCGGGACGGATTTGTGACCTTCGC8460.1549476090265224No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC5950.10897615528461092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)