FastQCFastQC Report
Wed 8 May 2024
EGAF00007962973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545991
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27320.5003745482984151No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18320.3355366663553062No Hit
AAACACCCGACCGACGCTCAGGCACAGACCG9430.1727134696359464No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9360.1714313972208333No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6550.1199653474141515No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6480.11868327499903845No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6080.11135714691267805No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5830.10677831685870279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)