FastQCFastQC Report
Wed 8 May 2024
EGAF00007962974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533315
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17370.3256986958926713No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12770.2394457309470013No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11000.20625709008747173No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9150.1715683976636697No Hit
ACCGTTGAAGCTCAGGGTAACCGGGACGGATTTGTGACCTTCGC9030.1693183203172609No Hit
GGACGGAGTAATGTCCAGCACGTTAACGCGACCGAACTGTTCCG5930.11119132220170068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)