FastQCFastQC Report
Wed 8 May 2024
EGAF00007962975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533315
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27500.5156427252186794No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24230.45432811752904007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17370.3256986958926713No Hit
AAACACCCGACCGACGCTCAGGCACAGACCG9790.18356881017784987No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9320.17475600723774878No Hit
GCAGCAACCAAAACCACCCGCACCGCTGCTA5890.11044129641956443No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5830.10931625774636003No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5670.10631615461781498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)