FastQCFastQC Report
Wed 8 May 2024
EGAF00007962976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519775
Total Bases22.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16770.32263960367466693No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12620.2427973642441441No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11010.21182242316386898No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10790.20758982251935934No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10580.2035496128132365No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10450.20104853061420808No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8370.16103121542975327No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7840.15083449569525276No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7660.1473714588042903No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7510.1444855947284883No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6930.13332692030205376No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6660.12813236496561012No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6640.12774758308883652No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5650.10870088018854311No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5570.1071617526814487No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5510.10600740705112789No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5380.10350632485209947No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5370.10331393391371266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)