FastQCFastQC Report
Wed 8 May 2024
EGAF00007962977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519775
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19290.37112212014814105No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16630.3199461305372517No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11980.23048434418738878No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11550.2222115338367563No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11350.21836371506902025No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11260.21663219662353905No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10810.20797460439613294No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10780.20739743158097254No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8350.16064643355297967No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7960.15314318695589438No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7700.14814102255783754No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7540.1450627675436487No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7430.14294646722139387No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7120.136982348131403No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6860.13198018373334616No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6650.12793997402722332No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5730.11024000769563755No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5630.10831609831176953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)