FastQCFastQC Report
Wed 8 May 2024
EGAF00007962978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498783
Total Bases21.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15720.31516711676219916No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11880.23817972946150934No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10720.21492312288109255No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10230.20509921148074414No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9790.19627774001920675No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9280.18605285264333388No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7540.15116794277270879No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7510.15056647880942212No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7460.14956403887061107No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7200.14435135118879353No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6240.12510450436362106No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6200.12430255241257221No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5960.11949084070627908No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5930.11888937674299244No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5920.11868888875523023No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5770.11568156893879704No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5470.10966692930593064No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5470.10966692930593064No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5270.10565716955068638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)