FastQCFastQC Report
Wed 8 May 2024
EGAF00007962979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498783
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27150.5443248867744088No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18330.3674944815681368No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15820.3171719966398213No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11650.2335685057429784No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11570.2319646018408807No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10680.21412117093004374No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10650.2135197069667571No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10220.2048987234929819No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10080.20209189166431096No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7830.15698209441781297No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7610.15257135868704425No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7400.14836111094403778No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6770.13573036771501837No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6700.13432695180068285No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6690.13412646381292065No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6460.12951524009438975No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6400.12831231216781647No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5590.1120727851590772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)