FastQCFastQC Report
Wed 8 May 2024
EGAF00007962980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521858
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17160.3288250826853282No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13410.2569664544761219No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11260.2157675076361769No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11150.21365965454204017No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10640.20388688110558809No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9940.19047327050653626No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8480.16249631125708527No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8230.15770573604313817No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7980.15291516082919107No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7590.14544186349543362No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6750.1293455307765714No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6720.12877066175089774No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6270.12014762636579299No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6080.11650678920319321No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5840.111907836997804No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5670.10865024585231997No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5660.1084586228437621No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5410.10366804762981502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)