FastQCFastQC Report
Wed 8 May 2024
EGAF00007962982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510136
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16380.3210908463625386No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12200.23915191243119482No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10430.20445528251289855No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10150.19896655009644487No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10080.19759436699233146No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9640.18896921605219003No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7800.1529004030297803No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7260.14231499051233396No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7120.13957062430410713No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7030.13780638888453275No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6600.12937726410212178No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6090.11937993005786693No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5980.11722364232283156No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5730.11232298837956936No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5720.11212696222183888No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5580.10938259601361207No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5380.1054620728590023No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5280.10350181128169743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)