FastQCFastQC Report
Wed 8 May 2024
EGAF00007962983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510136
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24070.47183496165728356No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18490.3624523656436715No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16200.31756237552338984No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11720.2297426568601314No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10920.21406056424169242No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10680.2093559364561607No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10410.20406323019743752No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10360.2030830994087851No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10350.2028870732510546No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7880.1544686122916242No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7610.14917590603290104No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7170.14055075509275958No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7130.13976665046183762No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6910.1354540749917669No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6450.12643687173616447No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6390.12526071478978154No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6340.1242805840011291No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5280.10350181128169743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)