FastQCFastQC Report
Wed 8 May 2024
EGAF00007962993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524620
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44310.8446113377301665No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16380.31222599214669666No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8630.16450001906141587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7890.15039457130875683No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7240.1380046509854752No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6800.12961762799740764No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6420.1223742899622584No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6370.12142121916815982No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6230.11875262094468376No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5890.1122717395448134No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5710.10884068468605848No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5330.10159734665090923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)