FastQCFastQC Report
Wed 8 May 2024
EGAF00007962995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499546
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40980.8203448731448154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25130.5030567755522014No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15330.30687864581039587No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7680.1537395955527619No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7280.14573232495105556No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6770.13552305493387998No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6340.12691523903704563No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6120.12251124020610715No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5560.11130106136371826No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5480.10969960724337699No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5290.10589615370756647No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5150.10309360899696923No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5070.10149215487662798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)