FastQCFastQC Report
Wed 8 May 2024
EGAF00007962997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513492
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44690.8703154090034508No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23680.4611561621213183No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15460.3010757713849485No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9030.1758547358089318No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8130.15832768572830735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7630.14859043568351601No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5930.11548378553122542No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5920.11528904053032958No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5720.11139414051241305No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5430.10574653548643406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)