FastQCFastQC Report
Wed 8 May 2024
EGAF00007962999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521546
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11400.21858091136735783No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6630.12712205634785811No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.11849386247809399No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5700.10929045568367891No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5360.10277137587096823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)