FastQCFastQC Report
Wed 8 May 2024
EGAF00007963002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524934
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5650.10763257857178236No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5430.10344157551235011No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5270.1003935732873085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)