FastQCFastQC Report
Wed 8 May 2024
EGAF00007963003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524934
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11540.21983716048112717No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6580.12534909150483678No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5770.10991858024056358No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5680.10820407898897767No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5550.10572757718113135No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5310.10115557384356891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)