FastQCFastQC Report
Wed 8 May 2024
EGAF00007963007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572211
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46530.813161578508627No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15130.2644129525647008No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10760.1880425227756894No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10100.176508315988333No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9540.16672171628996996No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8630.15081849178013004No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8110.1417309349173644No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6810.11901204276045026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)