FastQCFastQC Report
Wed 8 May 2024
EGAF00007963008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467576
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18140.3879583212140914No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10020.21429671326158745No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8260.1766557736068575No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7310.15633822095231578No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7230.15462726914982805No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6530.13965644087806048No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6360.13602066829777404No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6290.13452358547059728No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6190.13238489571748763No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5940.12703817133471348No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5820.12447174363098193No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5580.11933888822351874No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5530.11826954334696392No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5320.11377829486543364No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5290.11313668793950075No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5010.10714835663079372No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4900.1047957979023731No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4840.10351258405050728No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4810.1028709771245744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)