FastQCFastQC Report
Wed 8 May 2024
EGAF00007963009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467576
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27980.5984053929200814No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18270.39073861789313397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15950.34112101562098995No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13800.29513918592913235No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10750.2299091484592879No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10560.22584563792837956No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7830.167459407668486No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7100.15184697247078552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6400.13687614419901792No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6170.1319571577668657No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5920.1266104333840916No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5880.1257549574828477No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5840.12489948158160384No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5550.11869728129758585No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5460.11677246051978717No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5420.1159169846185433No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC5310.11356442589012267No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5190.11099799818639108No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5050.10800383253203756No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5050.10800383253203756No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5020.10736222560610467No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4720.10094615634677571No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4700.10051841839615377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)