FastQCFastQC Report
Wed 8 May 2024
EGAF00007963011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442426
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53051.199070579034686No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17760.4014230628398873No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15660.35395749797706283No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13180.29790292613906055No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10220.23099908233241265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9580.2165333863742185No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.1661294770198858No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6280.14194464158977999No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6080.13742411160284432No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5770.13041729012309403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5580.12612278663550514No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5540.125218680638118No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5490.1240885481413841No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5370.12137623014922269No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5130.11595159416489989No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5110.11549954116620632No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC5080.11482146166816598No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5070.11459543516881918No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4990.11278722317404494No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4840.10939682568384317No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4720.10668450769168178No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4510.10193795120539931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)