FastQCFastQC Report
Wed 8 May 2024
EGAF00007963012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468503
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18690.3989302096251251No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10670.2277466739807429No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8000.17075664403429647No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7180.15325408802078108No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6970.1487717261148808No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6800.14514314742915202No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6690.14279524357368042No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6520.13916666488795162No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6350.13553808620222282No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5890.12571957917025078No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5820.12422545853495069No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5680.1212372172643505No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5590.11931620501896464No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5430.11590107213827873No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5380.11483384311306438No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5330.11376661408785003No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5300.11312627667272142No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4920.10501533608109233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)