FastQCFastQC Report
Wed 8 May 2024
EGAF00007963013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468503
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26860.5733154323451504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18870.40277223411589685No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16890.3605099647174084No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15100.3223031656147346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11010.23500383135220052No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10490.22390464948997124No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7440.15880367895189573No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6850.14621037645436635No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6250.13340362815179413No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6140.13105572429632253No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6030.12870782044085097No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6030.12870782044085097No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5770.12315822950973634No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5620.11995654243409327No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5560.11867586760383605No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5440.1161145179433216No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5390.11504728891810725No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5390.11504728891810725No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5380.11483384311306438No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC5180.11056492701220696No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5060.10800357735169253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)