FastQCFastQC Report
Wed 8 May 2024
EGAF00007963014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450827
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17650.3915027272102159No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9800.2173782847966071No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7690.1705754091924397No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7240.1605937532579016No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6720.14905939528910203No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6280.139299553930887No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5930.1315360437595796No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5900.1308706000306104No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5830.12931789799634894No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5810.1288742688437028No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5590.12399434816459529No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5330.1182271691801955No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5240.11623083799328789No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5220.11578720884064175No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5030.11157273189050344No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4900.10868914239830355No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4890.1084673278219805No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4750.10536192375345753No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4560.10114744680331923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)