FastQCFastQC Report
Wed 8 May 2024
EGAF00007963015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450827
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51151.1345815578924954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17610.3906154689049236No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15900.3526851763536789No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13530.3001151217651117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10280.22802538446011442No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10220.22669449700217598No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7470.16569548851333216No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6200.13752503732030247No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5870.1302051563016412No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5680.1259906793515029No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5620.12465979189356449No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5590.12399434816459529No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5510.12221983155401074No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5510.12221983155401074No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5340.11844898375651858No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC5280.11711809629858018No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5220.11578720884064175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5180.11489995053534949No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4960.11002002985624197No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4940.10957640070359584No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4730.1049182946008114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)