FastQCFastQC Report
Wed 8 May 2024
EGAF00007963017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506106
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41790.8257163519104693No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28780.5686555780804812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13570.2681256495674819No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8650.17091281273092987No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7860.1553034344583941No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7380.14581925525482806No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.13317368298340662No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6340.12527020031376826No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5210.10294286177203985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)