FastQCFastQC Report
Wed 8 May 2024
EGAF00007963019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477414
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56101.1750807475273033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39850.8347053081811594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12140.25428663591767314No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8480.17762361388648007No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7340.1537449676800429No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6890.14431918628276505No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.1369880229737712No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6220.13028524509126252No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4810.10075113004645864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)